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Image Search Results
Journal: Bioinformation
Article Title: Identification and annotation of abiotic stress responsive candidate genes in peanut ESTs
doi: 10.6026/97320630081211
Figure Lengend Snippet: (a): Result of HSP 17.3KDa protein for domain prediction/identification by InterProScan. The blue colour bar is showing the Alpha crystalline/HSP20 domain having interpro ID PF00011 (IPR002068). The sequences of HSP 17.3KDa protein contain the highly similar domain with Alpha crystalline/HSP20 domain. The black bar is representing the HSP20 like chaperone (i.e. IPR008978 from SUPERFAMILY). These sequences also contain the unintegrated domain (i.e. noIPR). In unintegrated domain the blue bar is from GENE3D with no description, the next brown bar (PTHR11527) is for SMALL HEAT SHOCK PROTEIN FAMILY and the last brown bar is for HEAT SHOCK PROTEIN 1.7 (these brown bars from PANTHER); (b) Result of DnaJ protein for domain prediction/identification by InterProScan. In IPR001623 it represents the Heat shock protein Dnaj, N-terminal. The violet, blue, red, orange and black bar is representing the domain of Dnaj_N, Dnaj (PF00226 i.e. from PFAM), Dnaj (SM00271 i.e. from SMART), DNAJ_2 (i.e. from PROFILE) and Dnaj_N (SSF46565 i.e. from SUPERFAMILY) respectively. The next blue bar is for Dnaj_C i.e. Chaperone Dnaj, C-terminal (IPR002939) from PFAM. The green bar is for Heat shock protein Dnaj from PRINTS. The Dnaj peptide binding domain is represented from black bar (i.e. IPR008971 from SUPERFAMILY). The Heat shock protein Dnaj conserved site represented by yellow bar (i.e. IPR018253 from PROSITE). The unintegrated domain is containing two bars of different colour, the violet one is from GENE3D and the brown one is from PANTHER; (c) Result of Type 2 Metallothionein protein for domain prediction/identification by InterProScan. The blue colour bar is showing Type 2 Metallothionein domain of PFAM. It has no unintegrated region in its domain part. It only contains the unique PFAM domain.
Article Snippet: The functional characterization of protein depends upon their 3D structure, therefore from the resulting assembled contig sequences, conserved protein domains were assessed from
Techniques: Binding Assay